Selected Papers 121711

biochemistry
How Fast-Folding Proteins Fold
A Mechanism for the Evolution of Phosphorylation Sites

biophysics
Chemically Mediated Mechanical Expansion of the Pollen Tube Cell Wall
Nonequilibrium Candidate Monte Carlo Is an Efficient Tool for Equilibrium Simulation

autophagy
Autophagy: Renovation of Cells and Tissues
Autophagy [special issue]
Canonical and Non-canonical Autophagy: Variations on a Common Theme of Self-eating? [perspective]
Atg8 Transfer from Atg7 to Atg3: A Distinctive E1-E2 Architecture and Mechanism in the Autophagy Pathway
Structural Basis of Atg8 Activation by a Homodimeric E1, Atg7
Microtubule-associated Protein 1 Light Chain 3 Alpha (LC3)-associated Phagocytosis Is Required for the Efficient Clearance of Dead Cells

cell biology
ER Tubules Mark Sites of Mitochondrial Division
Extracting a Cellular Hierarchy from High-Dimensional Cytometry Data with SPADE
Linking Flickering to Waves and Whole-Cell Oscillations in a Mitochondrial Network Model
Physical Limits of Cells and Proteomes
A Quantitative Model for Ordered Cdk Substrate Dephosphorylation during Mitotic Exit
A Highly Dynamic ER-Derived Phosphatidylinositol-Synthesizing Organelle Supplies Phosphoinositides to Cellular Membranes

developmental biology
Measurement and Perturbation of Morphogen Lifetime: Effects on Gradient Shape

developmental biology, computational biology
Dynamics and Control of State-dependent Networks for Probing Genomic Organization

ecology, computational biology
Bayesian Modeling to Unmask and Predict Influenza A/H1N1pdm Dynamics in London
Temporal Dynamics of Bacterial Aging and Rejuvenation

evolution, computational biology
Predictability of Evolutionary Trajectories in Fitness Landscapes

imaging
Single-Molecule Transcript Counting of Stem-Cell Markers in the Mouse Intestine
A Reversibly Photoswitchable GFP-like Protein with Fluorescence Excitation Decoupled from Switching
Probing Protein Heterogeneity in the Plasma Membrane Using PALM and Pair Correlation Analysis